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LINC00297 long intergenic non-protein coding RNA 297 [ Homo sapiens (human) ]

Gene ID: 100874059, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00297provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 297provided by HGNC
Primary source
HGNC:HGNC:39210
See related
Ensembl:ENSG00000224329 AllianceGenome:HGNC:39210
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00297
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q12.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (29872613..29888405, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29095261..29111055, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30446750..30462542, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ubiquitin like 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5223 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7525 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5225 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:30445927-30446158 Neighboring gene translocase of inner mitochondrial membrane 8B pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7529 Neighboring gene long intergenic non-protein coding RNA 544

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2. Garcia-Barceló MM, et al. Hum Mol Genet, 2010 Jul 15. PMID 20460270, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046510.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139188
    Related
    ENST00000453470.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    29872613..29888405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    29095261..29111055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases