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INTS6L-AS1 INTS6L antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874118, updated on 10-Oct-2023

Summary

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Official Symbol
INTS6L-AS1provided by HGNC
Official Full Name
INTS6L antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41180
See related
Ensembl:ENSG00000225235 AllianceGenome:HGNC:41180
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DDX26B-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
Xq26.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (135520083..135520674, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (133845839..133846430, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134654008..134654599, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene CROCC pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:134583585-134584086 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:134595644-134596166 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21021 Neighboring gene WDR4 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29982 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29983 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21022 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21023 Neighboring gene integrator complex subunit 6 like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29984 Neighboring gene ETS2 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:134744552-134745751 Neighboring gene sarcoma antigen 4, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • DDX26B antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046740.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL357834
    Related
    ENST00000430820.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    135520083..135520674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    133845839..133846430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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