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LINC00351 long intergenic non-protein coding RNA 351 [ Homo sapiens (human) ]

Gene ID: 100874137, updated on 10-Oct-2023

Summary

Official Symbol
LINC00351provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 351provided by HGNC
Primary source
HGNC:HGNC:42669
See related
Ensembl:ENSG00000226317 AllianceGenome:HGNC:42669
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
13q31.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (85363603..85544662)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (84609223..84790583)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (85937738..86118797)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 375 Neighboring gene uncharacterized LOC105370291 Neighboring gene Sharpr-MPRA regulatory region 7086 Neighboring gene Sharpr-MPRA regulatory region 7103 Neighboring gene uncharacterized LOC105370292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:86006193-86006693 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:86182343-86182998 Neighboring gene NANOG hESC enhancer GRCh37_chr13:86193480-86193991 Neighboring gene RNA, U6 small nuclear 72, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:86238925-86240124 Neighboring gene SLIT and NTRK like family member 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046989.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355580, BM559680
    Related
    ENST00000424926.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    85363603..85544662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    84609223..84790583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)