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LINC00395 long intergenic non-protein coding RNA 395 [ Homo sapiens (human) ]

Gene ID: 100874157, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00395provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 395provided by HGNC
Primary source
HGNC:HGNC:42723
See related
Ensembl:ENSG00000231061 AllianceGenome:HGNC:42723
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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Location:
13q21.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (63667682..63738018, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (62889228..62959578, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (64241815..64312151, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903236 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:63978433-63978933 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33081 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33146 Neighboring gene uncharacterized LOC105370237 Neighboring gene uncharacterized LOC105370236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:64169591-64170092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:64170093-64170592 Neighboring gene Sharpr-MPRA regulatory region 1301 Neighboring gene uncharacterized LOC105370235 Neighboring gene keratin-associated protein 21-1-like Neighboring gene olfactory receptor family 7 subfamily E member 156 pseudogene Neighboring gene RNA, U6 small nuclear 81, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047011.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL445989
    Related
    ENST00000451570.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    63667682..63738018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    62889228..62959578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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