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CCDC200 coiled-coil domain containing 200 [ Homo sapiens (human) ]

Gene ID: 100874261, updated on 8-Mar-2024

Summary

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Official Symbol
CCDC200provided by HGNC
Official Full Name
coiled-coil domain containing 200provided by HGNC
Primary source
HGNC:HGNC:43658
See related
Ensembl:ENSG00000236383 AllianceGenome:HGNC:43658
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00854; TMEM106A-AS1
Expression
Biased expression in testis (RPKM 18.6), kidney (RPKM 1.8) and 2 other tissues See more
Orthologs
mouse all
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Genomic context

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Location:
17q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (43221417..43231269, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (44080187..44090123, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (41373437..41383336, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900391 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12237 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12238 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12239 Neighboring gene NBR1 autophagy cargo receptor Neighboring gene transmembrane protein 106A Neighboring gene Sharpr-MPRA regulatory region 10579 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:41379300-41379489 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41381411-41382085 Neighboring gene U2 spliceosomal RNA Neighboring gene RNA, U2 small nuclear 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Ulitsky I, et al. Cell, 2011 Dec 23. PMID 22196729, Free PMC Article
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 200
Names
TMEM106A antisense RNA 1 (non-protein coding)
TMEM106A antisense RNA 1 (tail to tail)
long intergenic non-protein coding RNA 854

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363254.2 → NP_001350183.1  coiled-coil domain-containing protein 200

    Status: VALIDATED

    Source sequence(s)
    AC024051
    Consensus CDS
    CCDS92329.1
    UniProtKB/Swiss-Prot
    A0A1B0GVQ3
    Related
    ENSP00000490609.1, ENST00000636331.2

RNA

  1. NR_047479.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024051
    Related
    ENST00000433702.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    43221417..43231269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    44080187..44090123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1B0GVQ3.1 GenPept UniProtKB/Swiss-Prot:A0A1B0GVQ3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials