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ARHGAP26-IT1 ARHGAP26 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100874372, updated on 10-Oct-2023

Summary

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Official Symbol
ARHGAP26-IT1provided by HGNC
Official Full Name
ARHGAP26 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41429
See related
Ensembl:ENSG00000230789 AllianceGenome:HGNC:41429
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.2) See more
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Genomic context

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Location:
5q31.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (143192500..143194166)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (143723870..143725531)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (142572065..142573731)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 26 Neighboring gene uncharacterized LOC124901097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23326 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:142469655-142470246 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:142472885-142473646 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:142473647-142474407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23327 Neighboring gene uncharacterized LOC124901098 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23331 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:142586801-142587300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23333 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:142593978-142594526 Neighboring gene uncharacterized LOC124901099 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:142594527-142595075 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23335 Neighboring gene uncharacterized LOC124901100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • ARHGAP26 intronic transcript 1 (non-protein coding)

Clone Names

  • AC004782.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046816.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004782
    Related
    ENST00000433186.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    143192500..143194166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    143723870..143725531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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