C7h12orf75 similar to human chromosome 12 open reading frame 75 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: C7h12orf75provided by RGD
Official Full Name: similar to human chromosome 12 open reading frame 75provided by RGD
Primary source: RGD:6495714
See related: Ensembl:ENSRNOG00000060879 AllianceGenome:RGD:6495714
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: OCC-1
Summary: Orthologous to human C12orf75 (chromosome 12 open reading frame 75). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 51.8), Adrenal (RPKM 20.5) and 6 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 7q13

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (21902745..21945704, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (20015102..20058448, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (25737979..26180359, complement)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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General gene information

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General protein information

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Preferred Names: overexpressed in colon carcinoma 1 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001271382.1 → NP_001258311.1 overexpressed in colon carcinoma 1 protein homolog

See identical proteins and their annotated locations for NP_001258311.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000007

UniProtKB/Swiss-Prot

P0CD96

UniProtKB/TrEMBL

A0A0G2KB69, A6IFG2

Related

ENSRNOP00000075676.2, ENSRNOT00000083450.2

Conserved Domains (1) summary

pfam15506
Location:1 → 62

OCC1; OCC1 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

21902745..21945704 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063262853.1 → XP_063118923.1 overexpressed in colon carcinoma 1 protein homolog isoform X2
XM_063262854.1 → XP_063118924.1 overexpressed in colon carcinoma 1 protein homolog isoform X3
XM_008765212.4 → XP_008763434.1 overexpressed in colon carcinoma 1 protein homolog isoform X1

UniProtKB/Swiss-Prot

P0CD96

Conserved Domains (1) summary

pfam15506
Location:1 → 62

OCC1; OCC1 family