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LOC100912041 uncharacterized LOC100912041 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100912041, updated on 13-Apr-2024

Summary

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Symbol
LOC100912041provided by RGD
Full Name
uncharacterized LOC100912041provided by RGD
Primary source
RGD:6489539
See related
Ensembl:ENSRNOG00000067892 AllianceGenome:RGD:6489539
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 253.2), Spleen (RPKM 200.7) and 9 other tissues See more
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Genomic context

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Location:
1q43
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215048335..215051624)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205619202..205622491)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (224921300..224924589)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene cholinergic receptor, muscarinic 1 Neighboring gene solute carrier family 3 member 2 Neighboring gene small nucleolar RNA SNORD29 Neighboring gene small nucleolar RNA SNORD31 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene small nucleolar RNA, C/D box 28B Neighboring gene small nucleolar RNA, C/D box 26 Neighboring gene small nucleolar RNA, C/D box 27 Neighboring gene small nucleolar RNA, C/D box 30 Neighboring gene SUMO specific peptidase 5 like 1 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131096.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FM045041, JAXUCZ010000001
    Related
    ENSRNOT00000115750.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    215048335..215051624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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