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ZNF354C zinc finger protein 354C [ Pan troglodytes (chimpanzee) ]

Gene ID: 101059435, updated on 29-Mar-2024

Summary

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Official Symbol
ZNF354Cprovided by VGNC
Official Full Name
zinc finger protein 354Cprovided by VGNC
Primary source
VGNC:VGNC:13619
Locus tag
CK820_G0044524
See related
Ensembl:ENSPTRG00000045846
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (176532409..176555557)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (176555191..176580974)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene F-box/WD repeat-containing protein 2-like Neighboring gene zinc finger protein 879 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 2 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 354C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    176532409..176555557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016954412.4 → XP_016809901.1  zinc finger protein 354C isoform X1

    UniProtKB/TrEMBL
    A0A2I3SNE8, A0A2J8JTS0, A0A6D2XUH1
    Related
    ENSPTRP00000078490.1
    Conserved Domains (3) summary
    smart00349
    Location:12 → 72
    KRAB; krueppel associated box
    COG5048
    Location:214 → 538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:218 → 238
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_063811736.1 → XP_063667806.1  zinc finger protein 354C isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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