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NPIPA7 nuclear pore complex interacting protein family member A7 [ Homo sapiens (human) ]

Gene ID: 101059938, updated on 3-Sep-2021

Summary

Official Symbol
NPIPA7provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member A7provided by HGNC
Primary source
HGNC:HGNC:41982
See related
Ensembl:ENSG00000214967
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPIPA8
Expression
Ubiquitous expression in skin (RPKM 37.5), ovary (RPKM 28.3) and 25 other tissues See more
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Genomic context

See NPIPA7 in Genome Data Viewer
Location:
16p13.11
Exon count:
14
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (16376940..16393972)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (16473102..16487829)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 1 Neighboring gene microRNA 6770-2 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 2 Neighboring gene microRNA 6511a-3 Neighboring gene uncharacterized LOC105371098 Neighboring gene uncharacterized LOC105371105 Neighboring gene geminin, DNA replication inhibitor pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
nuclear pore complex-interacting protein family member A7
Names
Nuclear pore complex-interacting protein family member A8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282507.2NP_001269436.1  nuclear pore complex-interacting protein family member A7

    See identical proteins and their annotated locations for NP_001269436.1

    Status: VALIDATED

    Source sequence(s)
    AC136619, AC138969
    Consensus CDS
    CCDS61864.1
    UniProtKB/Swiss-Prot
    E9PJI5, P0DM63
    Related
    ENSP00000431814.2, ENST00000530217.2
    Conserved Domains (1) summary
    pfam06409
    Location:22221
    NPIP; Nuclear pore complex interacting protein (NPIP)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    16376940..16393972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017022835.1XP_016878324.1  nuclear pore complex-interacting protein family member A7 isoform X4

    UniProtKB/Swiss-Prot
    E9PJI5, P0DM63
    Conserved Domains (1) summary
    pfam06409
    Location:22221
    NPIP; Nuclear pore complex interacting protein (NPIP)
  2. XM_017022834.1XP_016878323.1  nuclear pore complex-interacting protein family member A7 isoform X4

    UniProtKB/Swiss-Prot
    E9PJI5, P0DM63
    Conserved Domains (1) summary
    pfam06409
    Location:22221
    NPIP; Nuclear pore complex interacting protein (NPIP)
  3. XM_017022836.2XP_016878325.1  nuclear pore complex-interacting protein family member A7 isoform X6

    Conserved Domains (1) summary
    pfam06409
    Location:198
    NPIP; Nuclear pore complex interacting protein (NPIP)
  4. XM_017022833.2XP_016878322.1  nuclear pore complex-interacting protein family member A7 isoform X2

  5. XM_024450137.1XP_024305905.1  nuclear pore complex-interacting protein family member A7 isoform X7

    Conserved Domains (1) summary
    pfam06409
    Location:34226
    NPIP; Nuclear pore complex interacting protein (NPIP)
  6. XM_024450139.1XP_024305907.1  nuclear pore complex-interacting protein family member A7 isoform X9

    Conserved Domains (1) summary
    pfam06409
    Location:34190
    NPIP; Nuclear pore complex interacting protein (NPIP)
  7. XM_024450138.1XP_024305906.1  nuclear pore complex-interacting protein family member A7 isoform X8

    Conserved Domains (1) summary
    pfam06409
    Location:22214
    NPIP; Nuclear pore complex interacting protein (NPIP)
  8. XM_024450136.1XP_024305904.1  nuclear pore complex-interacting protein family member A7 isoform X5

    Conserved Domains (1) summary
    pfam06409
    Location:26183
    NPIP; Nuclear pore complex interacting protein (NPIP)
  9. XM_005255735.5XP_005255792.1  nuclear pore complex-interacting protein family member A7 isoform X1

    See identical proteins and their annotated locations for XP_005255792.1

    Conserved Domains (1) summary
    pfam06409
    Location:49333
    NPIP; Nuclear pore complex interacting protein (NPIP)
  10. XM_011522339.3XP_011520641.1  nuclear pore complex-interacting protein family member A7 isoform X3

    See identical proteins and their annotated locations for XP_011520641.1

    Conserved Domains (1) summary
    pfam06409
    Location:26310
    NPIP; Nuclear pore complex interacting protein (NPIP)
  11. XM_017022840.2XP_016878329.2  nuclear pore complex-interacting protein family member A7 isoform X6

    Conserved Domains (1) summary
    pfam06409
    Location:198
    NPIP; Nuclear pore complex interacting protein (NPIP)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    2040292..2055014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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