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vcl vinculin [ Takifugu rubripes (torafugu) ]

Gene ID: 101066406, updated on 21-Dec-2023

Summary

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Gene symbol
vcl
Gene description
vinculin
See related
Ensembl:ENSTRUG00000013129
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 1 NC_042285.1 (5145314..5164414, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 1 NC_018890.1 (4037978..4057272, complement)

Chromosome 1 - NC_042285.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase DUPD1-like Neighboring gene K(lysine) acetyltransferase 6B Neighboring gene adenosine kinase Neighboring gene C1q-related factor-like Neighboring gene uncharacterized LOC115252001 Neighboring gene dephospho-CoA kinase domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vinculin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042285.1 Reference fTakRub1.2 Primary Assembly

    Range
    5145314..5164414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003961182.3 → XP_003961231.1  vinculin isoform X2

    UniProtKB/TrEMBL
    H2U8X8
    Related
    ENSTRUP00000033394.2, ENSTRUT00000033520.3
    Conserved Domains (1) summary
    pfam01044
    Location:3 → 1067
    Vinculin; Vinculin family

  2. XM_029825928.1 → XP_029681788.1  vinculin isoform X1

    UniProtKB/TrEMBL
    H2U8X8
    Related
    ENSTRUP00000069866.1, ENSTRUT00000075347.1
    Conserved Domains (1) summary
    pfam01044
    Location:3 → 1068
    Vinculin; Vinculin family
Nucleotide Protein
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