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LOC101258334 CASP-like protein 2D1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101258334, updated on 6-Oct-2023

Summary

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Gene symbol
LOC101258334
Gene description
CASP-like protein 2D1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (29893..31807, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (29930..31798, complement)

Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene AUGMIN subunit 4 Neighboring gene ATP synthase gamma chain, chloroplastic-like Neighboring gene alpha - ketoglutarate dehydrogenase subunit E2 Neighboring gene UPF0505 protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CASP-like protein 2D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015449.3 Reference SL3.0 Primary Assembly

    Range
    29893..31807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004251417.4 → XP_004251465.1  CASP-like protein 2D1

    UniProtKB/TrEMBL
    A0A3Q7J1J2
    Conserved Domains (1) summary
    pfam04535
    Location:5 → 142
    DUF588; Domain of unknown function (DUF588)
Nucleotide Protein
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