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HNRNPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 10151, updated on 10-Oct-2023

Summary

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Official Symbol
HNRNPA3P1provided by HGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein A3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:13729
See related
AllianceGenome:HGNC:13729
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FBRNP; HNRPA3; D10S102; HNRPA3P1
Summary
This locus shares sequence similarity with heterogeneous nuclear ribonuclear proteins and represents an apparent transcribed pseudogene of the HNRPA3 gene, which maps to chromosome 2. [provided by RefSeq, Jul 2008]
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Genomic context

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Location:
10q11.21
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (43787412..43790417, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (44668282..44671287, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (44282860..44285865, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene elongin C pseudogene 30 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44249197-44249908 Neighboring gene uncharacterized LOC105378275 Neighboring gene long intergenic non-protein coding RNA 2658 Neighboring gene MPRA-validated peak936 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12499 Neighboring gene long intergenic non-protein coding RNA 619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44358448-44358948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44358949-44359449 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12564 Neighboring gene long intergenic non-protein coding RNA 840 Neighboring gene Sharpr-MPRA regulatory region 2960 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12586 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44372279-44372466

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of a cDNA, which is highly homologous to the ribonucleoprotein gene, from a locus (D10S102) closely linked to MEN2 (multiple endocrine neoplasia type 2). Takiguchi S, et al. Cytogenet Cell Genet, 1993. PMID 8101480
  2. A 1.5-megabase yeast artificial chromosome contig from human chromosome 10q11.2 connecting three genetic loci (RET, D10S94, and D10S102) closely linked to the MEN2A locus. Lairmore TC, et al. Proc Natl Acad Sci U S A, 1993 Jan 15. PMID 8093642, Free PMC Article
  3. Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues. Boukakis G, et al. BMC Cancer, 2010 Aug 17. PMID 20716340, Free PMC Article
  4. Heterogeneous nuclear ribonucleoprotein A3, a novel RNA trafficking response element-binding protein. Ma AS, et al. J Biol Chem, 2002 May 17. PMID 11886857
  5. HnRNP A3 genes and pseudogenes in the vertebrate genomes. Makeyev AV, et al. J Exp Zool A Comp Exp Biol, 2005 Apr 1. PMID 15776420

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Over-expression of hnRNP A3 is associated with non-small cell lung cancer.
    Title: Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study link novel loci to endometriosis.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002726.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355989

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    43787412..43790417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    44668282..44671287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_005758.1: Suppressed sequence

    Description
    NM_005758.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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