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Pgc progastricsin [ Octodon degus (degu) ]

Gene ID: 101583941, updated on 8-Mar-2024

Summary

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Gene symbol
Pgc
Gene description
progastricsin
See related
Ensembl:ENSODEG00000016519
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524581.1 (24069049..24077245)

NW_004524581.1Genomic Context describing neighboring genes Neighboring gene prickle planar cell polarity protein 4 Neighboring gene translocase of outer mitochondrial membrane 6 Neighboring gene fibroblast growth factor receptor substrate 3 Neighboring gene transcription factor EB Neighboring gene MyoD family inhibitor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524581 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rodent monophyly deduced from the unique gastric proteinase constitution and molecular phylogenetic analyses using pepsinogen-C cDNA sequences. Narita Y, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2006 Sep. PMID 20483259

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastricsin
Names
pepsinogen C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524581.1 Reference OctDeg1.0 Primary Assembly

    Range
    24069049..24077245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004624153.2 → XP_004624210.1  gastricsin

    UniProtKB/TrEMBL
    A0A6P3EUV9, Q689Z9
    Related
    ENSODEP00000022512.1, ENSODET00000022773.1
    Conserved Domains (3) summary
    pfam00026
    Location:75 → 392
    Asp; Eukaryotic aspartyl protease
    pfam07966
    Location:19 → 46
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:73 → 392
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases
Nucleotide Protein
Heading Accession and Version

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