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Efna5 ephrin A5 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101724262, updated on 8-Mar-2024

Summary

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Gene symbol
Efna5
Gene description
ephrin A5
Locus tag
GW7_08703
See related
Ensembl:ENSHGLG00000014327
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624743.1 (25336851..25611698, complement)

NW_004624743.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36 pseudogene Neighboring gene serine/threonine-protein kinase Kist pseudogene Neighboring gene protein PIGBOS1-like Neighboring gene uncharacterized LOC110348521 Neighboring gene V-type proton ATPase subunit G 1 pseudogene Neighboring gene uncharacterized LOC110348523 Neighboring gene F-box and leucine rich repeat protein 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624743 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression pattern of cadherins in the naked mole rat (Heterocephalus glaber) suggests innate cortical diversification of the cerebrum. Matsunaga E, et al. J Comp Neurol, 2011 Jun 15. PMID 21452207
  2. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin-A5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624743.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    25336851..25611698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004841761.2 → XP_004841818.1  ephrin-A5 isoform X2

    See identical proteins and their annotated locations for XP_004841818.1

    Related
    ENSHGLP00000020007.1, ENSHGLT00000020207.1
    Conserved Domains (1) summary
    cd10425
    Location:30 → 159
    Ephrin-A_Ectodomain; Ectodomain of Ephrin A

  2. XM_004841760.2 → XP_004841817.1  ephrin-A5 isoform X1

    See identical proteins and their annotated locations for XP_004841817.1

    UniProtKB/TrEMBL
    G5B3G9
    Related
    ENSHGLP00000020006.1, ENSHGLT00000020206.1
    Conserved Domains (1) summary
    cd10425
    Location:30 → 159
    Ephrin-A_Ectodomain; Ectodomain of Ephrin A
Nucleotide Protein
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