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LOC101747587 polyubiquitin-C-like [ Gallus gallus (chicken) ]

Gene ID: 101747587, updated on 8-Mar-2024

Summary

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Symbol
LOC101747587provided by CGNC
Full Name
polyubiquitin-C-likeprovided by CGNC
Primary source
CGNC:67085
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
UBB; UbI
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (7069957..7072005)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (6806859..6808910)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor corepressor 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class L Neighboring gene centromere protein V Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene purinergic receptor P2X 5 Neighboring gene germ cell associated 2, haspin Neighboring gene ER membrane protein complex subunit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Heat-shock inducible polyubiquitin gene UbI undergoes alternative initiation and alternative splicing in mature chicken testes. Mezquita J, et al. Mol Reprod Dev, 1997 Apr. PMID 9094093
  2. The chicken ubiquitin gene contains a heat shock promoter and expresses an unstable mRNA in heat-shocked cells. Bond U, et al. Mol Cell Biol, 1986 Dec. PMID 3025663, Free PMC Article
  3. Ubiquitin is a heat shock protein in chicken embryo fibroblasts. Bond U, et al. Mol Cell Biol, 1985 May. PMID 2987683, Free PMC Article
  4. The myostatin-induced E3 ubiquitin ligase RNF13 negatively regulates the proliferation of chicken myoblasts. Zhang Q, et al. FEBS J, 2010 Jan. PMID 20015074
  5. Effects of histone acetylation, ubiquitination and variants on nucleosome stability. Li W, et al. Biochem J, 1993 Dec 15. PMID 8280071, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyubiquitin-B
Names
polyubiquitin
ubiquitin B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001353988.2 → NP_001340917.1  polyubiquitin-B

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/Swiss-Prot
    P0CG62
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7069957..7072005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004946664.5 → XP_004946721.1  polyubiquitin-B isoform X1

    See identical proteins and their annotated locations for XP_004946721.1

    UniProtKB/Swiss-Prot
    P0CG62
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6806859..6808910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046929835.1 → XP_046785791.1  polyubiquitin-B isoform X1

    UniProtKB/Swiss-Prot
    P0CG62

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001079474.1: Suppressed sequence

    Description
    NM_001079474.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from rat: Ubc (GeneID:50522).
Nucleotide Protein
Heading Accession and Version

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