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Ptch1 patched 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101823482, updated on 8-Mar-2024

Summary

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Gene symbol
Ptch1
Gene description
patched 1
See related
EnsemblRapid:ENSMAUG00000014816
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429196.1 (81969993..82039548, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801686.1 (8350467..8412890, complement)

NW_024429196.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121143794 Neighboring gene uncharacterized LOC110342474 Neighboring gene uncharacterized LOC110342479 Neighboring gene uncharacterized LOC110342478 Neighboring gene uncharacterized LOC121143795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hedgehog family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hedgehog receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables smoothened binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein patched homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429196.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    81969993..82039548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040756135.1 → XP_040612069.1  protein patched homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A1U7QGI0
    Related
    ENSMAUP00000015390.2, ENSMAUT00000019317.2
    Conserved Domains (1) summary
    TIGR00918
    Location:2 → 1140
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

  2. XM_040756134.1 → XP_040612068.1  protein patched homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7QGI0
    Related
    ENSMAUP00000059701.1, ENSMAUT00000046803.1
    Conserved Domains (1) summary
    TIGR00918
    Location:30 → 1192
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

  3. XM_040756137.1 → XP_040612071.1  protein patched homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A1U7QGI0
    Conserved Domains (1) summary
    TIGR00918
    Location:1 → 1055
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

  4. XM_040756136.1 → XP_040612070.1  protein patched homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A1U7QGI0
    Conserved Domains (1) summary
    TIGR00918
    Location:1 → 1055
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family
Nucleotide Protein
Heading Accession and Version

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