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Ciita class II major histocompatibility complex transactivator [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101825611, updated on 2-Nov-2021

Summary

Gene symbol
Ciita
Gene description
class II major histocompatibility complex transactivator
See related
EnsemblRapid:ENSMAUG00000011847
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
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Genomic context

See Ciita in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (1619419..1670781, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801777.1 (2603446..2654861)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 16A Neighboring gene Dexi homolog Neighboring gene trans-golgi network vesicle protein 23 homolog A Neighboring gene uncharacterized LOC110343645 Neighboring gene nucleotide binding protein 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
MHC class II transactivator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    1619419..1670781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021235594.2XP_021091253.1  MHC class II transactivator isoform X6

    Conserved Domains (4) summary
    cd00116
    Location:8161142
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:10131040
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:445614
    NACHT; NACHT domain
    cl26464
    Location:224442
    Atrophin-1; Atrophin-1 family
  2. XM_040748100.1XP_040604034.1  MHC class II transactivator isoform X7

    Conserved Domains (4) summary
    PHA03377
    Location:197425
    PHA03377; EBNA-3C; Provisional
    cd00116
    Location:8611134
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:948972
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:10051032
    LRR_AMN1; leucine-rich repeat [structural motif]
  3. XM_040748099.1XP_040604033.1  MHC class II transactivator isoform X5

    Conserved Domains (3) summary
    PHA03377
    Location:197425
    PHA03377; EBNA-3C; Provisional
    cd00116
    Location:8611160
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:10321061
    LRR_RI; leucine-rich repeat [structural motif]
  4. XM_021235593.2XP_021091252.1  MHC class II transactivator isoform X4

    Conserved Domains (4) summary
    cd00116
    Location:8601185
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:10571084
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:489658
    NACHT; NACHT domain
    cl27975
    Location:212424
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
  5. XM_021235592.2XP_021091251.1  MHC class II transactivator isoform X3

    Conserved Domains (4) summary
    cd00116
    Location:8601186
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:10571084
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:489658
    NACHT; NACHT domain
    cl27975
    Location:212424
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
  6. XM_021235590.2XP_021091249.1  MHC class II transactivator isoform X1

    Related
    ENSMAUP00000011223.2, ENSMAUT00000015104.2
    Conserved Domains (4) summary
    cd00116
    Location:8611187
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:10581085
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:490659
    NACHT; NACHT domain
    cl27975
    Location:197425
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
  7. XM_021235591.2XP_021091250.1  MHC class II transactivator isoform X2

    Related
    ENSMAUP00000054434.1, ENSMAUT00000070737.1
    Conserved Domains (4) summary
    cd00116
    Location:8611186
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:10581085
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:490659
    NACHT; NACHT domain
    cl27975
    Location:197425
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
  8. XM_021235595.2XP_021091254.1  MHC class II transactivator isoform X8

    Related
    ENSMAUP00000011231.2, ENSMAUT00000015113.2
    Conserved Domains (4) summary
    cd00116
    Location:7841110
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:9811008
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:413582
    NACHT; NACHT domain
    cl27975
    Location:120348
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
  9. XM_021235596.2XP_021091255.1  MHC class II transactivator isoform X9

    Related
    ENSMAUP00000028743.1, ENSMAUT00000037211.1
    Conserved Domains (4) summary
    cd00116
    Location:7601086
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00034
    Location:957984
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:389558
    NACHT; NACHT domain
    cl27975
    Location:96313
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
  10. XM_040748101.1XP_040604035.1  MHC class II transactivator isoform X10

    Conserved Domains (2) summary
    PHA03377
    Location:213414
    PHA03377; EBNA-3C; Provisional
    cl39015
    Location:8611061
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
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