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F13a1 coagulation factor XIII A chain [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101829678, updated on 8-Mar-2024

Summary

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Gene symbol
F13a1
Gene description
coagulation factor XIII A chain
See related
EnsemblRapid:ENSMAUG00000003924
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429196.1 (57798851..57977296, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801610.1 (16155058..16334405)

NW_024429196.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121143607 Neighboring gene neuritin 1 Neighboring gene uncharacterized LOC110340209 Neighboring gene uncharacterized LOC121143764 Neighboring gene uncharacterized LOC110340195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-glutamine gamma-glutamyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blood coagulation, fibrin clot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide cross-linking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coagulation factor XIII A chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429196.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    57798851..57977296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005066385.4 → XP_005066442.1  coagulation factor XIII A chain

    UniProtKB/TrEMBL
    A0A1U7Q8V5
    Related
    ENSMAUP00000027846.1, ENSMAUT00000051696.1
    Conserved Domains (4) summary
    smart00460
    Location:309 → 400
    TGc; Transglutaminase/protease-like homologues
    COG1305
    Location:280 → 408
    YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
    pfam00868
    Location:47 → 164
    Transglut_N; Transglutaminase family
    pfam00927
    Location:519 → 623
    Transglut_C; Transglutaminase family, C-terminal ig like domain
Nucleotide Protein Strain
Heading Accession and Version

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