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Tbx5 T-box transcription factor 5 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101839399, updated on 8-Mar-2024

Summary

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Gene symbol
Tbx5
Gene description
T-box transcription factor 5
See related
EnsemblRapid:ENSMAUG00000003178
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429206.1 (11020209..11067980)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801691.1 (8242784..8291989)

NW_024429206.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121133924 Neighboring gene T-box transcription factor 3 Neighboring gene uncharacterized LOC121133973 Neighboring gene uncharacterized LOC121133911 Neighboring gene uncharacterized LOC110342607

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac left ventricle formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX5
Names
T-box 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429206.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    11020209..11067980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021232378.2 → XP_021088037.1  T-box transcription factor TBX5

    UniProtKB/TrEMBL
    A0A1U8C6V5
    Related
    ENSMAUP00000032143.1, ENSMAUT00000061783.1
    Conserved Domains (1) summary
    cd20189
    Location:54 → 238
    T-box_TBX4_5-like; DNA-binding domain of T-box transcription factor 4 and 5, and related T-box proteins

  2. XM_040731432.1 → XP_040587366.1  T-box transcription factor TBX5

    UniProtKB/TrEMBL
    A0A1U8C6V5
    Conserved Domains (1) summary
    cd20189
    Location:54 → 238
    T-box_TBX4_5-like; DNA-binding domain of T-box transcription factor 4 and 5, and related T-box proteins

  3. XM_040731431.1 → XP_040587365.1  T-box transcription factor TBX5

    UniProtKB/TrEMBL
    A0A1U8C6V5
    Related
    ENSMAUP00000003096.2, ENSMAUT00000004071.2
    Conserved Domains (1) summary
    cd20189
    Location:54 → 238
    T-box_TBX4_5-like; DNA-binding domain of T-box transcription factor 4 and 5, and related T-box proteins

  4. XM_040731433.1 → XP_040587367.1  T-box transcription factor TBX5

    UniProtKB/TrEMBL
    A0A1U8C6V5
    Conserved Domains (1) summary
    cd20189
    Location:54 → 238
    T-box_TBX4_5-like; DNA-binding domain of T-box transcription factor 4 and 5, and related T-box proteins
Nucleotide Protein Strain
Heading Accession and Version

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