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slc38a3b solute carrier family 38 member 3b [ Danio rerio (zebrafish) ]

Gene ID: 101884924, updated on 11-Apr-2024

Summary

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Official Symbol
slc38a3bprovided by ZNC
Official Full Name
solute carrier family 38 member 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-121120-3
See related
Ensembl:ENSDARG00000091061 AllianceGenome:ZFIN:ZDB-GENE-121120-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable L-asparagine transmembrane transporter activity; L-glutamine transmembrane transporter activity; and L-histidine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC38A3 (solute carrier family 38 member 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (53152591..53227361, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (53154055..53227589, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene inka box actin regulator 1b Neighboring gene guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b Neighboring gene uncharacterized LOC103911277 Neighboring gene RNA binding motif protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables L-asparagine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-glutamine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-histidine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in asparagine transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glutamine transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in histidine transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
sodium-coupled neutral amino acid transporter 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    53152591..53227361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009302723.3 → XP_009300998.1  sodium-coupled neutral amino acid transporter 3-like isoform X2

    UniProtKB/TrEMBL
    A0A8M3ATR8
    Conserved Domains (2) summary
    COG0814
    Location:65 → 488
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:65 → 493
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_009302722.3 → XP_009300997.1  sodium-coupled neutral amino acid transporter 3-like isoform X1

    UniProtKB/TrEMBL
    A0A0R4IAD9, A0A8M3B0T1
    Related
    ENSDARP00000130318.1, ENSDART00000160955.3
    Conserved Domains (2) summary
    COG0814
    Location:72 → 495
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:72 → 500
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version

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