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rps11b ribosomal protein S11b [ Danio rerio (zebrafish) ]

Gene ID: 101886382, updated on 11-Apr-2024

Summary

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Official Symbol
rps11bprovided by ZNC
Official Full Name
ribosomal protein S11bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7737
See related
Ensembl:ENSDARG00000093606 AllianceGenome:ZFIN:ZDB-GENE-030131-7737
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rps11l; mg:cb03a10; si:dkey-159f12.2
Summary
Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See rps11b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (26702659..26703210, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (26683474..26684071, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B Neighboring gene transmembrane protein 51a Neighboring gene kazrin, periplakin interacting protein a Neighboring gene si:ch211-156j16.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lactate Induces the Expressions of MCT1 and HCAR1 to Promote Tumor Growth and Progression in Glioblastoma. Longhitano L, et al. Front Oncol, 2022. PMID 35574309, Free PMC Article
  2. Triploidy in zebrafish larvae: Effects on gene expression, cell size and cell number, growth, development and swimming performance. van de Pol ILE, et al. PLoS One, 2020. PMID 32119699, Free PMC Article
  3. Dietary nucleotides can directly stimulate the immunity of zebrafish independent of the intestinal microbiota. Guo X, et al. Fish Shellfish Immunol, 2019 Mar. PMID 30590163
  4. Proinflammatory signaling regulates hematopoietic stem cell emergence. Espín-Palazón R, et al. Cell, 2014 Nov 20. PMID 25416946, Free PMC Article
  5. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. Cheung CT, et al. BMC Genomics, 2019 Jul 15. PMID 31307377, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
40S ribosomal protein S11; LOW QUALITY PROTEIN: 40S ribosomal protein S11; si:dkey-159f12.2
Names
ribosomal protein S11 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    26702659..26703210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478451.1 → XP_021334126.1  40S ribosomal protein S11 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BEG1, A0A8M9QE68
    Related
    ENSDARP00000123530.1, ENSDART00000137968.2
    Conserved Domains (1) summary
    cl25697
    Location:1 → 151
    Ribosomal_S17_N; Ribosomal_S17 N-terminal

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394726.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    318927..319573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167128.3 → XP_005167185.2  LOW QUALITY PROTEIN: 40S ribosomal protein S11 isoform X2

    Conserved Domains (1) summary
    cl25697
    Location:1 → 151
    Ribosomal_S17_N; Ribosomal_S17 N-terminal
Nucleotide Protein Strain
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