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slc47a3 solute carrier family 47 member 3 [ Danio rerio (zebrafish) ]

Gene ID: 101886448, updated on 11-Apr-2024

Summary

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Official Symbol
slc47a3provided by ZNC
Official Full Name
solute carrier family 47 member 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-755
See related
Ensembl:ENSDARG00000074561 AllianceGenome:ZFIN:ZDB-GENE-130530-755
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
mate5; si:dkey-175a17.3
Summary
Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in brain; eye; gill; liver; and pleuroperitoneal region. Orthologous to human SLC47A1 (solute carrier family 47 member 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 15
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (26600594..26610692)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (26667739..26678012)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 81 Neighboring gene solute carrier family 13 member 5b Neighboring gene solute carrier family 47 member 4 Neighboring gene solute carrier family 47 member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The first characterization of multidrug and toxin extrusion (MATE/SLC47) proteins in zebrafish (Danio rerio). Lončar J, et al. Sci Rep, 2016 Jun 30. PMID 27357367, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
multidrug and toxin extrusion protein 1-like
Names
solute carrier family 47 (multidrug and toxin extrusion), member 3
zmp:0000000752

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    26600594..26610692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157658.4 → XP_005157715.1  multidrug and toxin extrusion protein 1-like

    UniProtKB/TrEMBL
    A0A8F5XXI0, X1WEU3
    Related
    ENSDARP00000128744.1, ENSDART00000155352.2
    Conserved Domains (1) summary
    cd13132
    Location:31 → 465
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases