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LOC101927143 uncharacterized LOC101927143 [ Homo sapiens (human) ]

Gene ID: 101927143, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927143
Gene description
uncharacterized LOC101927143
See related
Ensembl:ENSG00000232628
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.5) and duodenum (RPKM 0.1) See more
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Genomic context

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Location:
1q42.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (224208747..224213279, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (223397678..223402195, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (224396449..224400981, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA72 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:224370121-224370951 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:224370952-224371781 Neighboring gene Sharpr-MPRA regulatory region 9300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2603 Neighboring gene delta 4-desaturase, sphingolipid 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1851 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224402200-224402893 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:224405308-224405505 Neighboring gene uncharacterized LOC101927164 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2604 Neighboring gene nuclear VCP like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224442412-224443337 Neighboring gene Sharpr-MPRA regulatory region 1236 Neighboring gene microRNA 320b-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110669.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092809, BC008027
    Related
    ENST00000436706.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    224208747..224213279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    223397678..223402195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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