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LINC01237 long intergenic non-protein coding RNA 1237 [ Homo sapiens (human) ]

Gene ID: 101927289, updated on 8-Nov-2023

Summary

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Official Symbol
LINC01237provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1237provided by HGNC
Primary source
HGNC:HGNC:49793
See related
Ensembl:ENSG00000233806 AllianceGenome:HGNC:49793
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in appendix (RPKM 1.3), spleen (RPKM 1.2) and 22 other tissues See more
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Genomic context

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Location:
2q37.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (241881363..242078722)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (242383553..242589193)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242823514..243020873)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242813965-242814521 Neighboring gene uncharacterized LOC105373978 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242822944-242823534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242842086-242842730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242842731-242843374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242843375-242844020 Neighboring gene receptor transporter protein 5 (putative) Neighboring gene family with sequence similarity 240 member C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242884151-242884650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242892163-242892811 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242892812-242893459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242907927-242908434 Neighboring gene long intergenic non-protein coding RNA 1238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242927157-242927693 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_58196 and experimental_58198 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:242946994-242947615 Neighboring gene uncharacterized FLJ38379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242975433-242975936 Neighboring gene uncharacterized LOC105373980 Neighboring gene long intergenic non-protein coding RNA 1880 Neighboring gene Sharpr-MPRA regulatory region 9157 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:243005518-243006194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:243006195-243006872 Neighboring gene long intergenic non-protein coding RNA 3100 Neighboring gene long intergenic non-protein coding RNA 1881 Neighboring gene capicua transcriptional repressor pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC131097.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110220.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BG772076, DA781142
    Related
    ENST00000415434.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    241881363..242078722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187523.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    4619..122792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187527.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    93461..94735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187647.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    4619..122432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    242383553..242589193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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