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ZFHX3-AS1 ZFHX3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927978, updated on 10-Oct-2023

Summary

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Official Symbol
ZFHX3-AS1provided by HGNC
Official Full Name
ZFHX3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56033
See related
Ensembl:ENSG00000259768
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q22.2-q22.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (72665133..72821654)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (78481608..78639465)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (72699032..72855553)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1572 Neighboring gene uncharacterized LOC124903812 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44094 Neighboring gene uncharacterized LOC124903718 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44118 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11096 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:72660846-72661404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11100 Neighboring gene Sharpr-MPRA regulatory region 2952 Neighboring gene VISTA enhancer hs20 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:72756067-72756616 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:72756617-72757164 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:72769685-72770266 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44255 Neighboring gene RNA, U7 small nuclear 90 pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:72804631-72805830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:72822417-72823032 Neighboring gene keratin 18 pseudogene 18 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:72879311-72879810 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7689 Neighboring gene uncharacterized LOC124903715 Neighboring gene RNA, U7 small nuclear 71 pseudogene Neighboring gene zinc finger homeobox 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171702.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004943, AC010748

  2. NR_171703.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004943, AC010748

  3. NR_171704.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004943, AC010748

  4. NR_171705.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004943, AC010748
    Related
    ENST00000700870.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    72665133..72821654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    78481608..78639465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases