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LOC101928030 uncharacterized LOC101928030 [ Homo sapiens (human) ]

Gene ID: 101928030, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928030
Gene description
uncharacterized LOC101928030
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.5) See more
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Genomic context

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See LOC101928030 in Genome Data Viewer
Location:
12p13.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (9371782..9381422, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (9354429..9364045, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (9524378..9534018, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:9435851-9436699 Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9442077-9442928 Neighboring gene uncharacterized LOC105369649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5941 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4225 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:9517085-9517601 Neighboring gene long intergenic non-protein coding RNA 2367 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9531319-9531821 Neighboring gene ovostatin homolog 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9555514-9556155 Neighboring gene uncharacterized LOC105369647

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120481.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009533, BX095924

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    9371782..9381422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    9354429..9364045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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