Format

Send to:

Choose Destination

PCAT7 prostate cancer associated transcript 7 [ Homo sapiens (human) ]

Gene ID: 101928099, updated on 24-Jul-2021

Summary

Official Symbol
PCAT7provided by HGNC
Official Full Name
prostate cancer associated transcript 7provided by HGNC
Primary source
HGNC:HGNC:48824
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCAN-R2
Expression
Biased expression in stomach (RPKM 5.4), testis (RPKM 2.0) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See PCAT7 in Genome Data Viewer
Location:
9q22.32
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (94555045..94568756)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (97317327..97331038)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14B Neighboring gene yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 1 Neighboring gene uncharacterized LOC107987100 Neighboring gene leishmanolysin like peptidase pseudogene Neighboring gene RNA, U6 small nuclear 669, pseudogene Neighboring gene fructose-bisphosphatase 2 Neighboring gene fructose-bisphosphatase 1 Neighboring gene uncharacterized LOC107987101

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • prostate cancer associated transcript 7 (non-protein coding)
  • prostate cancer-associated noncoding RNA 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121566.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL161728
  2. NR_121567.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL161728
  3. NR_121568.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses two alternate splice sites, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL161728
  4. NR_121569.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses two alternate splice sites, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL161728

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    94555045..94568756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center