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LINC01285 long intergenic non-protein coding RNA 1285 [ Homo sapiens (human) ]

Gene ID: 101928287, updated on 10-Oct-2023

Summary

Official Symbol
LINC01285provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1285provided by HGNC
Primary source
HGNC:HGNC:50344
See related
Ensembl:ENSG00000203650 AllianceGenome:HGNC:50344
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01285 in Genome Data Viewer
Location:
Xq24
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (118839556..118882015)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (117217290..117259788)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (117973519..118015978)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 13 receptor subunit alpha 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:117904251-117904750 Neighboring gene TMEM30B pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20951 Neighboring gene zinc finger CCHC-type containing 12 Neighboring gene AKR7A2P pseudogene 1 Neighboring gene COBL pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:118125886-118127085 Neighboring gene LON peptidase N-terminal domain and ring finger 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20952

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110393.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006965
    Related
    ENST00000608172.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    118839556..118882015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    117217290..117259788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)