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LOC101928764 coiled-coil domain-containing protein 144B [ Homo sapiens (human) ]

Gene ID: 101928764, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101928764
Gene description
coiled-coil domain-containing protein 144B
See related
Ensembl:ENSG00000290911
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
13q12.11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (21283487..21298091, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (20476566..20491169, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (21857626..21872230, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:21822225-21822726 Neighboring gene uncharacterized LOC105370105 Neighboring gene estrogen-related receptor alpha pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7434 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7435 Neighboring gene mitochondrial intermediate peptidase pseudogene 3 Neighboring gene long intergenic non-protein coding RNA 539 Neighboring gene G protein-coupled receptor kinase 6 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21911141-21911723 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21912641-21913197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:21916347-21916850 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:21920736-21920939 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 52

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000685200.1

  2. NR_170116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000688909.1

  3. NR_170117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000693255.1

  4. NR_170118.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032

  5. NR_170119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032

  6. NR_170120.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000691149.1

  7. NR_172127.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000691664.1

  8. NR_172128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032

  9. NR_172129.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000692035.1

  10. NR_172130.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158032
    Related
    ENST00000689689.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    21283487..21298091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    20476566..20491169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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