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PRDM4-AS1 PRDM4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929162, updated on 10-Oct-2023

Summary

Official Symbol
PRDM4-AS1provided by HGNC
Official Full Name
PRDM4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56186
See related
Ensembl:ENSG00000258136
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.1), esophagus (RPKM 1.1) and 25 other tissues See more
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Genomic context

Location:
12q23.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (107736555..107759968)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (107700047..107723459)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (108130332..108153745)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene PWP1 homolog, endonuclein Neighboring gene uncharacterized LOC124903010 Neighboring gene ribosomal protein L17 pseudogene 38 Neighboring gene PR/SET domain 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4822 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6956 Neighboring gene achaete-scute family bHLH transcription factor 4 Neighboring gene uncharacterized LOC105369963

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120474.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007622, AK093309, DB084413
    Related
    ENST00000546714.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    107736555..107759968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    107700047..107723459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)