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LNCPRESS2 lncRNA p53 regulated and ESC associated 2 [ Homo sapiens (human) ]

Gene ID: 101929194, updated on 10-Oct-2023

Summary

Official Symbol
LNCPRESS2provided by HGNC
Official Full Name
lncRNA p53 regulated and ESC associated 2provided by HGNC
Primary source
HGNC:HGNC:52747
See related
AllianceGenome:HGNC:52747
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
4q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (92262498..92277302, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (95589046..95603850, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (93183649..93198453, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:93050287-93050788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:93050789-93051288 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:93104511-93105710 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93192087-93192994 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:93193903-93194810 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:93194811-93195716 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:93197533-93198440 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93198441-93199346 Neighboring gene Sharpr-MPRA regulatory region 6143 Neighboring gene PMPCA pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:93353264-93354196 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:93354197-93355129 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:93358086-93358597 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93359794-93360688 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93360689-93361582 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:93361583-93362476 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93365158-93366051 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:93366052-93366944 Neighboring gene glutamate ionotropic receptor delta type subunit 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93440900-93441601 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:93441602-93442302 Neighboring gene MT-ND1 pseudogene 19 Neighboring gene RACK1 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125920.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    EF565118

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    92262498..92277302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    95589046..95603850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)