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RARA-AS1 RARA antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929693, updated on 11-Sep-2019

Summary

Official Symbol
RARA-AS1provided by HGNC
Official Full Name
RARA antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49577
See related
Ensembl:ENSG00000265666
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in small intestine (RPKM 2.1), colon (RPKM 1.9) and 25 other tissues See more

Genomic context

See RARA-AS1 in Genome Data Viewer
Location:
17q21.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (40340867..40343136, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (38497119..38498942, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene cell division cycle 6 Neighboring gene uncharacterized LOC105371934 Neighboring gene retinoic acid receptor alpha Neighboring gene Sharpr-MPRA regulatory region 13940 Neighboring gene gap junction protein delta 3 Neighboring gene peptidylprolyl isomerase A pseudogene 54

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110861.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC080112
    Related
    ENST00000581080.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    40340867..40343136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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