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Smim19 small integral membrane protein 19 [ Mus musculus (house mouse) ]

Gene ID: 102032, updated on 23-Jun-2021

Summary

Official Symbol
Smim19provided by MGI
Official Full Name
small integral membrane protein 19provided by MGI
Primary source
MGI:MGI:2142501
See related
Ensembl:ENSMUSG00000031534
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI3168; EST-c3; EST-c39; AI316807; BG694986
Expression
Ubiquitous expression in heart adult (RPKM 12.0), cerebellum adult (RPKM 11.2) and 28 other tissues See more
Orthologs
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Genomic context

See Smim19 in Genome Data Viewer
Location:
8; 8 A2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22952630..22966895, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (22462614..22476879, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (23573086..23587351, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S31 Neighboring gene predicted gene, 39140 Neighboring gene solute carrier family 20, member 2 Neighboring gene voltage-dependent anion channel 3 Neighboring gene predicted gene, 30086

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 19
Names
UPF0697 protein C8orf40 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012667.2NP_001012685.2  small integral membrane protein 19 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BB618223, BC048089
    Consensus CDS
    CCDS52521.1
    UniProtKB/Swiss-Prot
    Q80ZU4
    UniProtKB/TrEMBL
    E9PUT6
    Related
    ENSMUSP00000131855.2, ENSMUST00000163774.3
    Conserved Domains (1) summary
    pfam15117
    Location:15112
    UPF0697; uncharacterized protein family UPF0697
  2. NM_001146117.1NP_001139589.1  small integral membrane protein 19 isoform 2

    See identical proteins and their annotated locations for NP_001139589.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream translational start codon, compared to variant 1. The resulting isoform (2) is shorter at the N-terminus, compared to isoform 1.
    Source sequence(s)
    AK140957, BB618223, BC048089, BQ922100
    Consensus CDS
    CCDS52520.1
    UniProtKB/Swiss-Prot
    Q80ZU4
    Related
    ENSMUSP00000033935.9, ENSMUST00000033935.16
    Conserved Domains (1) summary
    pfam15117
    Location:10107
    UPF0697; Uncharacterized protein family UPF0697

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    22952630..22966895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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