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SPON2 spondin 2 [ Canis lupus familiaris (dog) ]

Gene ID: 102155429, updated on 10-Mar-2024

Summary

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Official Symbol
SPON2provided by VGNC
Official Full Name
spondin 2provided by VGNC
Primary source
VGNC:VGNC:59026
See related
Ensembl:ENSCAFG00845000883
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (92411007..92417759)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (93879686..93886426)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (92021312..92028059)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (91584382..91591120)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (91637257..91643961)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene C-terminal binding protein 1 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene uncharacterized LOC119871274 Neighboring gene protein chibby homolog 1-like Neighboring gene glycoprotein 25L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spondin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    92411007..92417759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038662131.1 → XP_038518059.1  spondin-2

    UniProtKB/TrEMBL
    A0A8C0Q5G8, A0A8I3MD18
    Related
    ENSCAFP00845001163.1, ENSCAFT00845001482.1
    Conserved Domains (2) summary
    pfam06468
    Location:54 → 241
    Spond_N; Spondin_N
    pfam19028
    Location:291 → 343
    TSP1_spondin; Spondin-like TSP1 domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    91584382..91591120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472632.1 → XP_038328560.1  spondin-2

    Conserved Domains (2) summary
    pfam06468
    Location:54 → 241
    Spond_N; Spondin_N
    pfam19028
    Location:291 → 343
    TSP1_spondin; Spondin-like TSP1 domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    91637257..91643961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597910.1 → XP_038453838.1  spondin-2

    Conserved Domains (2) summary
    pfam06468
    Location:54 → 241
    Spond_N; Spondin_N
    pfam19028
    Location:291 → 343
    TSP1_spondin; Spondin-like TSP1 domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    92021312..92028059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038533623.1 → XP_038389551.1  spondin-2

    UniProtKB/TrEMBL
    A0A8C0Q5G8, A0A8I3MD18
    Conserved Domains (2) summary
    pfam06468
    Location:54 → 241
    Spond_N; Spondin_N
    pfam19028
    Location:291 → 343
    TSP1_spondin; Spondin-like TSP1 domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    93879686..93886426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038482619.1 → XP_038338547.1  spondin-2

    UniProtKB/TrEMBL
    A0A8C0Q5G8, A0A8I3MD18
    Conserved Domains (2) summary
    pfam06468
    Location:54 → 241
    Spond_N; Spondin_N
    pfam19028
    Location:291 → 343
    TSP1_spondin; Spondin-like TSP1 domain
Nucleotide Protein
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