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SMAGP small cell adhesion glycoprotein [ Sus scrofa (pig) ]

Gene ID: 102160467, updated on 10-Mar-2024

Summary

Gene symbol
SMAGP
Gene description
small cell adhesion glycoprotein
See related
Ensembl:ENSSSCG00000061033
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 51.1), lung (RPKM 48.0) and 8 other tissues See more
Orthologs
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Genomic context

See SMAGP in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018085018.1 (139131..160570)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (17309510..17357618, complement)

NW_018085018.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 6 Neighboring gene chymotrypsin like elastase 1 Neighboring gene bridging integrator 2 Neighboring gene DAZ associated protein 2 Neighboring gene POU class 6 homeobox 1 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene transcription factor CP2

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
small cell adhesion glycoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018085018.1 Reference Sscrofa11.1 Primary Assembly

    Range
    139131..160570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021081720.1XP_020937379.1  small cell adhesion glycoprotein

    UniProtKB/TrEMBL
    A0A4X1WCF3, A0A4X1WDI5, A0A8D0IR68, A0A8W4FGD8
    Related
    ENSSSCP00000077941.1, ENSSSCT00000097248.1