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TPCN1 two pore segment channel 1 [ Myotis brandtii (Brandt's bat) ]

Gene ID: 102244963, updated on 30-Mar-2024

Summary

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Gene symbol
TPCN1
Gene description
two pore segment channel 1
Locus tag
D623_10006667
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis brandtii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005353602.1 (359904..409385, complement)

NW_005353602.1Genomic Context describing neighboring genes Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1 Neighboring gene uncharacterized LOC106726400 Neighboring gene IQ motif containing D Neighboring gene RBPJ interacting and tubulin associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005353602.1 Unplaced Scaffold Reference ASM41265v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Seim I, et al. Nat Commun, 2013. PMID 23962925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two pore calcium channel protein 1
Names
Two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41265v1

Genomic

  1. NW_005353602.1 Reference ASM41265v1

    Range
    359904..409385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005857019.2 → XP_005857081.1  two pore calcium channel protein 1 isoform X6

    See identical proteins and their annotated locations for XP_005857081.1

    UniProtKB/TrEMBL
    S7MCL3
    Conserved Domains (1) summary
    pfam00520
    Location:143 → 331
    Ion_trans; Ion transport protein

  2. XM_014541064.1 → XP_014396550.1  two pore calcium channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:143 → 331
    Ion_trans; Ion transport protein

  3. XM_014541060.1 → XP_014396546.1  two pore calcium channel protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00520
    Location:186 → 374
    Ion_trans; Ion transport protein

  4. XM_014541056.1 → XP_014396542.1  two pore calcium channel protein 1 isoform X1

    Conserved Domains (1) summary
    pfam00520
    Location:186 → 374
    Ion_trans; Ion transport protein

  5. XM_014541059.1 → XP_014396545.1  two pore calcium channel protein 1 isoform X2

    Conserved Domains (1) summary
    pfam00520
    Location:160 → 348
    Ion_trans; Ion transport protein

  6. XM_014541068.1 → XP_014396554.1  two pore calcium channel protein 1 isoform X5

    Conserved Domains (1) summary
    pfam00520
    Location:74 → 262
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version

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