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hao1 hydroxyacid oxidase (glycolate oxidase) 1 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102306486, updated on 10-Mar-2024

Summary

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Gene symbol
hao1
Gene description
hydroxyacid oxidase (glycolate oxidase) 1
See related
Ensembl:ENSHBUG00000006191
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582724.1 (180346..205808, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179768.1 (180144..204858, complement)

NW_024582724.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102299552 Neighboring gene protein asteroid homolog 1 Neighboring gene SMG1 nonsense mediated mRNA decay associated PI3K related kinase Neighboring gene F-box and leucine-rich repeat protein 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity. Baldo L, et al. Genome Biol Evol, 2011. PMID 21617250, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyacid oxidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582724.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    180346..205808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014340346.2 → XP_014195832.1  hydroxyacid oxidase 1

    UniProtKB/TrEMBL
    A0A3Q2V388
    Related
    ENSHBUP00000004855.1
    Conserved Domains (2) summary
    cd02809
    Location:7 → 359
    alpha_hydroxyacid_oxid_FMN; Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate ...
    pfam01070
    Location:14 → 364
    FMN_dh; FMN-dependent dehydrogenase
Nucleotide Protein
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