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CLDN1 claudin 1 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102488870, updated on 10-Mar-2024

Summary

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Gene symbol
CLDN1
Gene description
claudin 1
Locus tag
TREES_T100021757
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Also known as
Claudin-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006160028.1 (1657629..1672681)

NW_006160028.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 207 Neighboring gene claudin 16 Neighboring gene dnaJ homolog subfamily A member 1 pseudogene Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene uncharacterized LOC114009300

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006160028 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tupaia CD81, SR-BI, claudin-1, and occludin support hepatitis C virus infection. Tong Y, et al. J Virol, 2011 Mar. PMID 21177818, Free PMC Article
  2. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-1
Names
claudin-1 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287364.1 → NP_001274293.1  claudin-1

    See identical proteins and their annotated locations for NP_001274293.1

    Status: PROVISIONAL

    Source sequence(s)
    EF584564
    UniProtKB/TrEMBL
    A5YT67, L9JKK4
    Conserved Domains (1) summary
    pfam00822
    Location:5 → 173
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006160028.1 Reference TupChi_1.0

    Range
    1657629..1672681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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