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Hoxa3l1 homeobox A3 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102546856, updated on 29-Feb-2024

Summary

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Official Symbol
Hoxa3l1provided by RGD
Official Full Name
homeobox A3 like 1provided by RGD
Primary source
RGD:7620814
See related
AllianceGenome:RGD:7620814
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hoxa3
Expression
Biased expression in Kidney (RPKM 84.4), Lung (RPKM 39.4) and 8 other tissues See more
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Genomic context

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Location:
4q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (82605930..82623670)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (81275313..81293064)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 Unlocalized Scaffold NW_007906169.1 (61851..63464)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene Hoxa transcript antisense RNA, myeloid-specific 1 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC120102276 Neighboring gene homeo box A4 Neighboring gene Hoxa cluster antisense RNA 3 Neighboring gene homeo box A5 Neighboring gene homeobox A6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
vasodilator-stimulated phosphoprotein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    82605930..82623670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108677.2 → XP_038964605.1  vasodilator-stimulated phosphoprotein-like

RNA

  1. XR_005503581.2 RNA Sequence

  2. XR_005503580.2 RNA Sequence

  3. XR_362650.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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