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C130050O18Rikl RIKEN cDNA C130050O18 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 102546864, updated on 3-Apr-2024

Summary

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Official Symbol
C130050O18Riklprovided by RGD
Official Full Name
RIKEN cDNA C130050O18 gene likeprovided by RGD
Primary source
RGD:7673409
See related
Ensembl:ENSRNOG00000022426 AllianceGenome:RGD:7673409
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 36.9), Spleen (RPKM 35.1) and 9 other tissues See more
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Genomic context

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Location:
12q11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (20343597..20355312, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (15229743..15241457, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (17321270..17333460, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 2A Neighboring gene similar to human chromosome 7 open reading frame 50 Neighboring gene G protein-coupled estrogen receptor 1 Neighboring gene G protein-coupled receptor 146 Neighboring gene microRNA 339

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C130050O18Rikl

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    20343597..20355312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271734.1 → XP_063127804.1  uncharacterized protein C130050O18Rikl

    UniProtKB/TrEMBL
    F1M1V7

  2. XM_006248979.5 → XP_006249041.1  uncharacterized protein C130050O18Rikl

    See identical proteins and their annotated locations for XP_006249041.1

    UniProtKB/TrEMBL
    F1M1V7
    Related
    ENSRNOP00000037689.7
Nucleotide Protein Strain
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