U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102553173 uncharacterized LOC102553173 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102553173, updated on 29-Feb-2024

Summary

Go to the top of the page Help
Symbol
LOC102553173provided by RGD
Full Name
uncharacterized LOC102553173provided by RGD
Primary source
RGD:7683637
See related
AllianceGenome:RGD:7683637
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 65.5), Spleen (RPKM 36.7) and 8 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102553173 in Genome Data Viewer
Location:
1q31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (133355088..133404238, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (123943804..123994246, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (131382310..131432779, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134484900 Neighboring gene DDB1 and CUL4 associated factor 12, pseudogene 1 Neighboring gene uncharacterized LOC102553329 Neighboring gene uncharacterized LOC134485134 Neighboring gene nuclear receptor subfamily 2, group F, member 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    133355088..133404238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005499217.2 RNA Sequence

  2. XR_005499214.2 RNA Sequence

  3. XR_005499216.2 RNA Sequence

  4. XR_005499215.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.