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Gm27166 predicted gene 27166 [ Mus musculus (house mouse) ]

Gene ID: 102634550, updated on 8-Feb-2024

Summary

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Official Symbol
Gm27166provided by MGI
Official Full Name
predicted gene 27166provided by MGI
Primary source
MGI:MGI:5521009
See related
Ensembl:ENSMUSG00000098519 AllianceGenome:MGI:5521009
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9 A4; 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (32943088..33002095)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (33031792..33090799)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3331 Neighboring gene STARR-seq mESC enhancer starr_23738 Neighboring gene STARR-seq mESC enhancer starr_23739 Neighboring gene STARR-seq mESC enhancer starr_23740 Neighboring gene STARR-seq mESC enhancer starr_23741 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32733458-32733567 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32736269-32736505 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32738968-32739077 Neighboring gene predicted gene 27162 Neighboring gene STARR-seq mESC enhancer starr_23744 Neighboring gene STARR-seq mESC enhancer starr_23745 Neighboring gene predicted gene, 32171 Neighboring gene STARR-positive B cell enhancer ABC_E5058 Neighboring gene STARR-seq mESC enhancer starr_23747 Neighboring gene STARR-seq mESC enhancer starr_23748 Neighboring gene STARR-seq mESC enhancer starr_23749 Neighboring gene STARR-seq mESC enhancer starr_23750 Neighboring gene transmembrane emp24 domain trafficking protein 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    32943088..33002095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_379229.3 RNA Sequence

    Related
    ENSMUST00000184476.2
Nucleotide Protein Strain
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