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Gm17396 predicted gene, 17396 [ Mus musculus (house mouse) ]

Gene ID: 102635502, updated on 8-Feb-2024

Summary

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Official Symbol
Gm17396provided by MGI
Official Full Name
predicted gene, 17396provided by MGI
Primary source
MGI:MGI:4937030
See related
Ensembl:ENSMUSG00000079669 AllianceGenome:MGI:4937030
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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Location:
9 F3; 9 69.13 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (117081601..117083766)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (117252533..117254698)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene RNA binding motif, single stranded interacting protein Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:117063131-117063298 Neighboring gene STARR-seq mESC enhancer starr_25440 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene VISTA enhancer mm1697 Neighboring gene predicted gene, 39452 Neighboring gene STARR-seq mESC enhancer starr_25441 Neighboring gene STARR-seq mESC enhancer starr_25443 Neighboring gene STARR-seq mESC enhancer starr_25444 Neighboring gene predicted gene, 39451 Neighboring gene STARR-seq mESC enhancer starr_25445 Neighboring gene STARR-seq mESC enhancer starr_25446 Neighboring gene STARR-seq mESC enhancer starr_25447 Neighboring gene STARR-seq mESC enhancer starr_25448 Neighboring gene STARR-seq mESC enhancer starr_25449 Neighboring gene predicted gene, 39450

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166691.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126928
    Related
    ENSMUST00000172075.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    117081601..117083766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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