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Gm34220 predicted gene, 34220 [ Mus musculus (house mouse) ]

Gene ID: 102637400, updated on 5-Mar-2024

Summary

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Official Symbol
Gm34220provided by MGI
Official Full Name
predicted gene, 34220provided by MGI
Primary source
MGI:MGI:5593379
See related
AllianceGenome:MGI:5593379
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm40573; Linc-YY1
Summary
Involved in skeletal muscle cell differentiation and skeletal muscle tissue regeneration. Is expressed in embryo; limb muscle; and myotome. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 4.1), ovary adult (RPKM 3.3) and 28 other tissues See more
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Genomic context

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Location:
12 F1; 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (108744781..108758647, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1156 Neighboring gene predicted gene, 33628 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:110004036-110004330 Neighboring gene predicted gene, 33682 Neighboring gene STARR-positive B cell enhancer ABC_E11524 Neighboring gene YY1 transcription factor Neighboring gene solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 Neighboring gene STARR-positive B cell enhancer ABC_E7179 Neighboring gene predicted gene, 53767

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000078.7 Chromosome 12 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1. Zhou L, et al. Nat Commun, 2015 Dec 11. PMID 26658965
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein-containing complex binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein-containing complex binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in skeletal muscle cell differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in skeletal muscle cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in skeletal muscle tissue regeneration IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in skeletal muscle tissue regeneration IMP
Inferred from Mutant Phenotype
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189041.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC152061

  2. NR_189042.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC152061

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    108744781..108758647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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