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Ccdc188 coiled-coil domain containing 188 [ Mus musculus (house mouse) ]

Gene ID: 102638083, updated on 10-Mar-2024

Summary

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Official Symbol
Ccdc188provided by MGI
Official Full Name
coiled-coil domain containing 188provided by MGI
Primary source
MGI:MGI:3647803
See related
Ensembl:ENSMUSG00000090777 AllianceGenome:MGI:3647803
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm7873; EG665975
Summary
Is expressed in nervous system and neural retina. Orthologous to human CCDC188 (coiled-coil domain containing 188). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 38.3) See more
Orthologs
human all
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Genomic context

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Location:
16 A3; 16 11.29 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (18032091..18038211)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (18214227..18220347)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34679 Neighboring gene RIKEN cDNA 4933432I09 gene Neighboring gene zinc finger, DHHC domain containing 8 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:18231149-18231350 Neighboring gene predicted gene, 25777 Neighboring gene RAN binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 188

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370887.1 → NP_001357816.1  coiled-coil domain-containing protein 188

    Status: INFERRED

    Source sequence(s)
    AC118542
    UniProtKB/TrEMBL
    A0A338P6G2
    Conserved Domains (3) summary
    PHA03247
    Location:4 → 152
    PHA03247; large tegument protein UL36; Provisional
    pfam14992
    Location:359 → 401
    TMCO5; TMCO5 family
    cl21462
    Location:161 → 187
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

RNA

  1. NR_169085.1 RNA Sequence

    Status: INFERRED

    Source sequence(s)
    AC118542
    Related
    ENSMUST00000231965.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    18032091..18038211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246068.1 → XP_011244370.1  coiled-coil domain-containing protein 188 isoform X8

    See identical proteins and their annotated locations for XP_011244370.1

    Conserved Domains (1) summary
    pfam14992
    Location:133 → 175
    TMCO5; TMCO5 family

  2. XM_006522809.5 → XP_006522872.1  coiled-coil domain-containing protein 188 isoform X1

    See identical proteins and their annotated locations for XP_006522872.1

    Conserved Domains (3) summary
    PHA03247
    Location:101 → 249
    PHA03247; large tegument protein UL36; Provisional
    pfam14992
    Location:523 → 565
    TMCO5; TMCO5 family
    cl21462
    Location:258 → 284
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_011246064.4 → XP_011244366.1  coiled-coil domain-containing protein 188 isoform X2

    See identical proteins and their annotated locations for XP_011244366.1

    UniProtKB/TrEMBL
    A0A338P6G2
    Related
    ENSMUSP00000155981.2, ENSMUST00000231369.2
    Conserved Domains (3) summary
    PHA03247
    Location:101 → 249
    PHA03247; large tegument protein UL36; Provisional
    pfam14992
    Location:490 → 532
    TMCO5; TMCO5 family
    cl21462
    Location:258 → 284
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  4. XM_011246065.3 → XP_011244367.1  coiled-coil domain-containing protein 188 isoform X4

    See identical proteins and their annotated locations for XP_011244367.1

    UniProtKB/TrEMBL
    A0A338P6G2
    Conserved Domains (3) summary
    PHA03247
    Location:101 → 249
    PHA03247; large tegument protein UL36; Provisional
    pfam14992
    Location:456 → 498
    TMCO5; TMCO5 family
    cl21462
    Location:258 → 284
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  5. XM_017317179.3 → XP_017172668.1  coiled-coil domain-containing protein 188 isoform X5

    Conserved Domains (2) summary
    pfam14992
    Location:422 → 464
    TMCO5; TMCO5 family
    cl21462
    Location:157 → 183
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  6. XM_006522811.4 → XP_006522874.1  coiled-coil domain-containing protein 188 isoform X3

    See identical proteins and their annotated locations for XP_006522874.1

    Conserved Domains (3) summary
    PHA03247
    Location:101 → 249
    PHA03247; large tegument protein UL36; Provisional
    pfam14992
    Location:489 → 531
    TMCO5; TMCO5 family
    cl21462
    Location:258 → 284
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  7. XM_030248901.1 → XP_030104761.1  coiled-coil domain-containing protein 188 isoform X7

    Conserved Domains (1) summary
    pfam14992
    Location:231 → 273
    TMCO5; TMCO5 family

  8. XM_011246066.4 → XP_011244368.1  coiled-coil domain-containing protein 188 isoform X6

    See identical proteins and their annotated locations for XP_011244368.1

    Conserved Domains (2) summary
    pfam14992
    Location:298 → 340
    TMCO5; TMCO5 family
    cl21462
    Location:33 → 59
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

RNA

  1. XR_384716.5 RNA Sequence

  2. XR_875941.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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