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Gm38525 predicted gene, 38525 [ Mus musculus (house mouse) ]

Gene ID: 102640171, updated on 8-Feb-2024

Summary

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Official Symbol
Gm38525provided by MGI
Official Full Name
predicted gene, 38525provided by MGI
Primary source
MGI:MGI:5621410
See related
AllianceGenome:MGI:5621410
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in spleen adult (RPKM 1.2), liver E18 (RPKM 1.2) and 11 other tissues See more
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Genomic context

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Location:
7 E3; 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (104003766..104019090, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (104354559..104369881, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 15133 Neighboring gene predicted gene, 17788 Neighboring gene tripartite motif-containing 34B Neighboring gene tripartite motif-containing 12C Neighboring gene STARR-positive B cell enhancer ABC_E1090 Neighboring gene predicted gene, 36430 Neighboring gene tripartite motif-containing 30B Neighboring gene STARR-positive B cell enhancer ABC_E8194 Neighboring gene tripartite motif-containing 30C Neighboring gene tripartite motif-containing 30A Neighboring gene predicted gene, 25405

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
tripartite motif-containing protein 30A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    104003766..104019090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508379.3 → XP_006508442.1  tripartite motif-containing protein 30A-like isoform X2

    Conserved Domains (3) summary
    TIGR02168
    Location:120 → 248
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  2. XM_006508380.3 → XP_006508443.1  tripartite motif-containing protein 30A-like isoform X3

    Conserved Domains (3) summary
    TIGR02168
    Location:120 → 248
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  3. XM_036153667.1 → XP_036009560.1  tripartite motif-containing protein 30A-like isoform X1

    Conserved Domains (3) summary
    PRK12704
    Location:130 → 266
    PRK12704; phosphodiesterase; Provisional
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins

  4. XM_036153669.1 → XP_036009562.1  tripartite motif-containing protein 30A-like isoform X4

    Conserved Domains (2) summary
    cd16591
    Location:12 → 61
    RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
    cd19761
    Location:96 → 134
    Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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