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LOC102662278 polyadenylation and cleavage factor homolog 4-like [ Glycine max (soybean) ]

Gene ID: 102662278, updated on 11-Apr-2024

Summary

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Gene symbol
LOC102662278
Gene description
polyadenylation and cleavage factor homolog 4-like
Locus tag
GLYMA_19G191800v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (45344828..45353030)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene threonine--tRNA ligase, chloroplastic/mitochondrial 2 Neighboring gene serine/threonine-protein kinase CTR1 Neighboring gene polyadenylation and cleavage factor homolog 4 Neighboring gene PAN domain-containing protein At5g03700

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_038255.2 Chromosome 19 Reference Glycine_max_v4.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in termination of RNA polymerase II transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylation and cleavage factor homolog 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001371754.1 → NP_001358683.1  polyadenylation and cleavage factor homolog 4-like

    Status: VALIDATED

    Source sequence(s)
    ACUP04006943
    UniProtKB/TrEMBL
    A0A0R0EYS5, K7MZ66
    Conserved Domains (1) summary
    cd16982
    Location:68 → 180
    CID_Pcf11; CID (CTD-Interacting Domain) of Pcf11

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    45344828..45353030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041012421.1 → XP_040868355.1  polyadenylation and cleavage factor homolog 4-like isoform X1

    UniProtKB/TrEMBL
    K7MZ66
    Conserved Domains (1) summary
    cd16982
    Location:68 → 180
    CID_Pcf11; CID (CTD-Interacting Domain) of Pcf11

  2. XM_041012422.1 → XP_040868356.1  polyadenylation and cleavage factor homolog 4-like isoform X2

    UniProtKB/TrEMBL
    A0A0R0F058, K7MZ67
    Conserved Domains (1) summary
    cd16982
    Location:68 → 180
    CID_Pcf11; CID (CTD-Interacting Domain) of Pcf11

  3. XM_041012423.1 → XP_040868357.1  polyadenylation and cleavage factor homolog 4-like isoform X3

    UniProtKB/TrEMBL
    K7MZ66
Nucleotide Protein
Heading Accession and Version

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