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PTTG1IP2 PTTG1IP family member 2 [ Homo sapiens (human) ]

Gene ID: 102723899, updated on 10-Mar-2024

Summary

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Official Symbol
PTTG1IP2provided by HGNC
Official Full Name
PTTG1IP family member 2provided by HGNC
Primary source
HGNC:HGNC:55318
See related
Ensembl:ENSG00000251154 AllianceGenome:HGNC:55318
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis (RPKM 2.5), colon (RPKM 1.3) and 21 other tissues See more
Orthologs
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Genomic context

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Location:
7q21.13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (90469639..90513397)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (91717921..91761664)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (90098953..90142711)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene cell division cycle 42 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:90032955-90033480 Neighboring gene Sharpr-MPRA regulatory region 3343 Neighboring gene claudin 12 Neighboring gene Sharpr-MPRA regulatory region 14602 Neighboring gene uncharacterized LOC124901693 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:90208498-90209697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18359 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18361 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18360 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26246 Neighboring gene small nucleolar RNA U13 Neighboring gene MPRA-validated peak6628 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26247 Neighboring gene cyclin dependent kinase 14 Neighboring gene TVP23C pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PTTG1IP family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365443.2 → NP_001352372.1  PTTG1IP family member 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC002456
    Consensus CDS
    CCDS94140.1
    UniProtKB/Swiss-Prot
    P0DTF9
    Related
    ENSP00000504097.1, ENST00000509356.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    90469639..90513397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    91717921..91761664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DTF9.1 GenPept UniProtKB/Swiss-Prot:P0DTF9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials