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LINC02420 long intergenic non-protein coding RNA 2420 [ Homo sapiens (human) ]

Gene ID: 102724433, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02420provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2420provided by HGNC
Primary source
HGNC:HGNC:53350
See related
Ensembl:ENSG00000256172 AllianceGenome:HGNC:53350
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02420 in Genome Data Viewer
Location:
12q15
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67440998..67442559, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67420536..67422097, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (67834778..67836339, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369812 Neighboring gene uncharacterized LOC124903072 Neighboring gene N-terminal asparagine amidase pseudogene 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:67842156-67842340 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:67863093-67863593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6626 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6627 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:67913523-67914188 Neighboring gene long intergenic non-protein coding RNA 2408 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:67948831-67949332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:67949333-67949832 Neighboring gene long intergenic non-protein coding RNA 2442 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:67983387-67983606

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146500.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078983
    Related
    ENST00000543387.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    67440998..67442559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    67420536..67422097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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